rs249321367 SNP Detail

Summary

• ID
  rs249321367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGAGGAG CAGGTAAAAG
  CCTGGTACCT CCATTTTTAC TTTATGGGCC TCAAGCCCTA TGACCCGAGT TTGGTCTTTC
  CAGCTCTGGT GGAAGAACTG ATTGCAAGTA AGTGTCCTCC GACCTCCACA TGCGCACGAC
  AACCTTTGAG TCAAATTACT GCTCATCTCT GCACGGAGCT GTGCCAGTCA TCTAAGGAAT
  S
  TTCTACAGAA CTGGGAGTCT TCCCCATTCA AGACCAAAGT CAACAAGGTG AGAGTGGCTG
  AGGTATATTC AAGATTTGAA GAGACGACAT AACATTGTCA GAGAAGGCAA GGACTTAGGA
  AATTGGGAGG GGGGGGGCAC ATACTCCAAG AGGAAGCCAT CAAATGAGAA AATCCCAGCC
  AGCCATCTTC TGCCTTGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317074	CHEV_4_129780471	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249321367					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997020 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1519 bp distal
Rr600439	regulatory region 600439	659 bp distal
Rr600440	regulatory region 600440	160 bp distal
Rr600441	regulatory region 600441	593 bp proximal
Rr600442	regulatory region 600442	1275 bp proximal
Tssr39229	transcription start site region 39229	1659 bp upstream