rs249297945 SNP Detail

Summary

• ID
  rs249297945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100139894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGCTATT TCTGAAAAGC CCAGGACCTG
  GAACCCTTTG CCTAGACTGG GGTCTTCTCC TGGTCCGTAG GAAAGACATG GATGGCAGGC
  AAGGGCTGGT TCTAGGGCTA AGCTCACAGA GAGCAGAGGT CCTTGGGAGA GATGGGAACT
  Y
  TTTGGCTATC TTACTGATTT CTTTGCTCCT GTGCACCTAG CGGCCAAGTC CATTCAGGTC
  TCAGGTCCTC CCTCCCTTTG CAACCTGTGC CCATGAACAA AAACGTACTT TGCTTGCTTT
  GTTCCCAGTA TTCAGATTCC ACTGCCACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321226575	CHEV_4_99955302	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249297945					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100139894 () rs orientation: forward

Symbol	Name	Function Class
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595970	regulatory region 595970	497 bp proximal
Rr595971	regulatory region 595971	1823 bp proximal