rs249296853 SNP Detail

Summary

• ID
  rs249296853
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106695474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTACCTTT CCTTCTGATC
  ATGTGAAATA TCCAGGCTAG AAGGAATCTG TGCCCTAACT CAAAGCCACA TTCAACCAAA
  ATTATTGTAT TTAAGTCTCA GACTCTGCCC TTTGATACAC CCAGCACTTG TCTGTTGAGT
  AAACTTGCCA TATACTTTCA GTTGCCTAGT AGGAAAAAGG GCTTGGTGCT TCCTGTGACC
  W
  TGTGATTAGT CTCTCTTGCT TAATTTCATT TCTACCATGC CTGTGGCAGG AAGTGGGGGA
  GTAATACTTC TTTGAGTACA TATGTAGTGC CTTGTAACTG GAAATGTTAA TGGTTCCAGT
  CTCTATAATA CATTCATAGT AGTCTTCTCT CTGAGGGAGT CTTTGGAAAA CTCCTGAACT
  CCTGTATATT GTGTGCACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359132989	MGP_WTSI_3_106591076	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249296853					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359132989	MGP_WTSI_3_106591076	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106695474 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	1639 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	1668 bp proximal
Rr582869	regulatory region 582869	1981 bp proximal
Tssr1002	transcription start site region 1002	131 bp upstream
Tssr1003	transcription start site region 1003	374 bp upstream
Tssr31142	transcription start site region 31142	103 bp upstream
Tssr31143	transcription start site region 31143	601 bp upstream
Tssr31144	transcription start site region 31144	641 bp upstream
Tssr31145	transcription start site region 31145	700 bp upstream
Tssr34999	transcription start site region 34999	40 bp upstream
Tssr35000	transcription start site region 35000	410 bp downstream
Tssr35001	transcription start site region 35001	1845 bp downstream
Tssr35002	transcription start site region 35002	1876 bp downstream
Tssr35003	transcription start site region 35003	1889 bp downstream
Tssr35004	transcription start site region 35004	1915 bp downstream
Tssr35005	transcription start site region 35005	1971 bp downstream
Tssr35006	transcription start site region 35006	1985 bp downstream