rs249244376 SNP Detail

Summary

• ID
  rs249244376
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135748284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TACAGTGAAA ACGATTCTAA
  C
  TCCCACCATA CCCTCTTCGT AGAGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353737	CHEV_4_135576888	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249244376					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135748284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	within coordinates
Eloa	elongin A	Intron
Gm68304	predicted gene, 68304	1028 bp upstream
Rr398604	regulatory region 398604	698 bp upstream
Rr602239	regulatory region 602239	within coordinates
Rr602240	regulatory region 602240	780 bp proximal
Rr602241	regulatory region 602241	1039 bp proximal
Tssr44023	transcription start site region 44023	656 bp downstream
Tssr44024	transcription start site region 44024	712 bp downstream
Tssr44025	transcription start site region 44025	749 bp downstream