rs249229401 SNP Detail

Summary

• ID
  rs249229401
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155273695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATCTGA GTTAAAGGCT
  AACCTAGTCT ACATAGTGAA TTCCAAGTCA CCCAAGGCTA CTTAGCAAAT GTTTGTCTTT
  AAAAAAAAAA AATAGGAGGA GGAGGAGGAG AAGAGATGGA GGAGGAGGAG AAAAAGAGAT
  GACAATGAAA TAACCTCTGG AGATAAAGAA ATGGTTGGGC TTTTAAGAGA GCCTCCTGTT
  S
  TTCCAGAATT CAGTTCTCAG TACCCTTACT GGGTAACTAT CCAGCACCTT CCTCTGGTCT
  CCAGGCACCC TCACACACAT AACATGCACA TATAATAATA AGATCCCCAC CAAAACCAAC
  ACTCCCTAAG TAGTAAGTGT AGTTTAAAGA AGAATAAAAG GCAGAACCTC TGGAGACAGA
  CCCCAGGGGA GACCCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441141	CHEV_4_154563347	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249229401					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155273695 () rs orientation: forward

Symbol	Name	Function Class
Rr377459	regulatory region 377459	within coordinates
Rr606403	regulatory region 606403	1475 bp distal
Rr606404	regulatory region 606404	235 bp distal
Rr606405	regulatory region 606405	118 bp proximal
Rr606406	regulatory region 606406	572 bp proximal
Ski	ski sarcoma viral oncogene homolog (avian)	Intron