rs249228444 SNP Detail

Summary

• ID
  rs249228444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59839235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGTGTGG TGgcttttgg gagtctgaat
  gattgctgaa aacttcaagg ccagcctgag ctacatggta tattactact ggccatcttg
  agctgtacaC Ctgtatttgt ttcagttctc tagagaaata tactattgga atatatatat
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg taatattaaa aagagattta ttagagtgcc
  ttacaggctg tagcccagct agtccagtaa tggcCTCAtc ttagttaggg tttctattgc
  tgtgaagaga caccatgacc atggcaagtc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141520	CHEV_4_59852107	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249228444					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59839235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593159	regulatory region 593159			1166 bp distal
Snx30	sorting nexin family member 30			Intron
				mRNA-UTR