rs249196053 SNP Detail

Summary

• ID
  rs249196053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156740056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTATAAA CTTAACTGTG TTGGCCTGGG
  CTTAATGTGA GGTCAGAAGA CAGAATCTAT TCCAGGCATA TACATTACCA TCATGGCCCA
  AGACCCTCAA CATAAGAAAT CCACATTAAA ATATGTTCAC ATGGCcaggc atatctgtga
  Y
  tttgaggtca ccctggtcta catagagagc tctaggccag caagactaca tggtaagaca
  ctgccttaaa aaTAAAGTTC ACAACAACTG TAGTTCTTCA ACAGACAGTG GAAACAAATC
  TGAGCATGGA CTCCATACTA TATACCAGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320073038	CHEV_1_158842617	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249196053					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156740056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			1148 bp downstream
Rr421276	regulatory region 421276			1173 bp distal