rs249140515 SNP Detail

Summary

• ID
  rs249140515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54823114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTCTCC CAGAGACCCT
  GAGAGCTGGG CTTCCGGGGC CAGCTAAGAA AAGAAAAGAT TCGGGAGGCG TTCCACAGCA
  AGGAGCCAAA TCTCAAGTAG TCCCAGGAGA GTCGGGATGA AGCATCCCGA AGCTAAGGAA
  CCCCCTGCCA CCCTAGGCGG GGCGTCCGGA GGCCCTCTCT AGGGACCAGC CCACTGCCAT
  Y
  GCTCTGTGAC CGGTTCGTTT TAGTTCCCAA CTCTTGTGCT CACTGATGTG CAGATCTGGA
  CTCCGGCGCT GGGGTGGGGC AGCGGCCCTG TCTTGACGAC GTGCGCCCCA CGACGATCCT
  AGGGAATGCA CCTCGCGGGG GCGCGGAGCG AGAGCAGAGC GCACGAGCGG CGAGCGCAAT
  GGGAGTGGGC ACCCGGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358019071	MGP_WTSI_3_54719615	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249140515					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358019071	MGP_WTSI_3_54719615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54823114 () rs orientation: forward

Symbol	Name	Function Class
Gm31358	predicted gene, 31358	326 bp upstream
Rr576863	regulatory region 576863	673 bp distal
Rr576864	regulatory region 576864	172 bp distal
Rr576865	regulatory region 576865	127 bp proximal
Rr576866	regulatory region 576866	184 bp proximal
Rr576867	regulatory region 576867	189 bp proximal
Rr576868	regulatory region 576868	325 bp proximal
Sertm1	serine rich and transmembrane domain containing 1	Intron
Tssr33288	transcription start site region 33288	121 bp downstream
Tssr33289	transcription start site region 33289	174 bp downstream
Tssr33290	transcription start site region 33290	292 bp downstream