rs249105647 SNP Detail

Summary

• ID
  rs249105647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGCTCA ATAACTGGTG
  ATTTGCACAA GCAGAGTTAA AAAACGTACG TTAACAAAGG AAAACTTCAA ATCCAGATCT
  CTAAACCTGA GGTTCATGGG TGAGCTAAAA ACCATGTGAC ATTTTGAAAC ATGACTTCCC
  AGCCTTGGCC CTACTCACAC TTCAAGCTAG ATGATTCTGG GTGTGCCCTG TGTAGTTACA
  R
  AGCAGACTCC TGGCTTTATG GACTGGCTGC CAGTAGGGCC TTCCCAGTCT ATGGGTCATG
  CTTACCCCAA ATATCTCCAG ACTCTGCCAA ATGTCTCCCA GGAACTATTC TTTCCTCTTC
  TCAAGACTAT TGTGATAAAC TTAATGTGTA TTACATCGCT TTCCTGGGAG GCTCATTACC
  TGTATCCTAT TCCTACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766599	CHEV_3_52844218	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249105647					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	792 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1251 bp upstream
Rr576626	regulatory region 576626	339 bp proximal
Rr576627	regulatory region 576627	1143 bp proximal
Rr576628	regulatory region 576628	1298 bp proximal
Rr576629	regulatory region 576629	1842 bp proximal
Rr576630	regulatory region 576630	1857 bp proximal
Tssr29102	transcription start site region 29102	1221 bp upstream
Tssr29103	transcription start site region 29103	1334 bp upstream