rs249062210 SNP Detail

Summary

• ID
  rs249062210
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135673714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CCTCACAAGA GGAGCGATGC
  T
  CCGCCTCCGG CCCTAACCAC GCCCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353559	CHEV_4_135502318	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249062210					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135673714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15085	CpG island 15085	within coordinates
Gm69275	predicted gene, 69275	26 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	62 bp upstream
Rr602211	regulatory region 602211	37 bp distal
Rr602212	regulatory region 602212	within coordinates
Rr602213	regulatory region 602213	56 bp proximal
Rr602214	regulatory region 602214	1836 bp proximal
Tssr39660	transcription start site region 39660	44 bp upstream
Tssr44007	transcription start site region 44007	21 bp upstream