rs249041997 SNP Detail

Summary

• ID
  rs249041997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG ACTCTAGCCA CCTCCCAGGC
  Y
  CCCAGGAAGA ACAGAAGTGC AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367270	CHEV_4_137324349	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249041997					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602709	regulatory region 602709			1775 bp distal
Rr602710	regulatory region 602710			394 bp proximal
Rr602711	regulatory region 602711			1199 bp proximal
Tssr44134	transcription start site region 44134			1990 bp upstream
Tssr44135	transcription start site region 44135			1968 bp upstream
Tssr44136	transcription start site region 44136			1933 bp upstream
Tssr44137	transcription start site region 44137			1229 bp downstream
Tssr44138	transcription start site region 44138			1260 bp downstream
Tssr44139	transcription start site region 44139			1514 bp downstream
Tssr44140	transcription start site region 44140			1528 bp downstream
Tssr44141	transcription start site region 44141			1545 bp downstream
Tssr44142	transcription start site region 44142			1554 bp downstream
Tssr44143	transcription start site region 44143			1570 bp downstream
Tssr44144	transcription start site region 44144			1596 bp downstream
Tssr44145	transcription start site region 44145			1621 bp downstream