rs248974397 SNP Detail

Summary

• ID
  rs248974397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130486483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTGCTG AAGGTTGCAC
  AGCTGGTCAT TGGAAGAGCT AAAATTCAGG TCCACTAAGA ACTCGTAGTA TTATAACGAA
  AAGTGTAAGT ACATTTAAAA AAATAGTATT TGGCAAGAGT TTTAATACAC TGACCTTTGG
  GGCTGGAGAG ATGACTCAGC AGTTAAGAGC ACTGACTGCT CTTCCAGAGG ACCCACGTTC
  M
  ATTCCCACAA ACTTTAGGTT AGGTCCTGTG GAGCACTAGA GAGCAGGCTT GGCTCCAGCA
  GTACGGAATC TCAGCCTGTG GGTTCTCTGG GCTGAAGCGC TACCTGGGCA GGAGCTAGCT
  TCATAGAACT CATTATCTGG CACTCACTCT TTGGACTCTG TAAATGTGTC GTTCTTATTT
  CTACGTGCAG ACCGACCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359720647	MGP_WTSI_3_130395752	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248974397					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359720647	MGP_WTSI_3_130395752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130486483 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	119 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398015	regulatory region 398015	1816 bp downstream
Rr398016	regulatory region 398016	1204 bp upstream
Rr585189	regulatory region 585189	1910 bp distal
Rr585190	regulatory region 585190	1321 bp distal
Rr585191	regulatory region 585191	687 bp distal
Rr585192	regulatory region 585192	1277 bp distal
Rr585193	regulatory region 585193	1044 bp distal
Rr585194	regulatory region 585194	1292 bp proximal
Rr585195	regulatory region 585195	1379 bp proximal
Rr585196	regulatory region 585196	1907 bp proximal