rs248936668 SNP Detail

Summary

• ID
  rs248936668
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGGGACC AAGTATGCAA
  ATATCTGAGA GCCTATTGGG GCATTGTCAC TCACACCACC ACAGGAGCTC ATTGGCATAA
  TGCTTTTTTT TGGGGGGGGG CGGGGCGGTT CAAGACAGGG TTTCTGTGTA GCCCTGGCTG
  TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTCGAACTT AGAAATCTGC CTGCCTCCTT
  C
  CCCCCCCCCC GCGCCCCCCC CCCCGAGTGC TGGGATTAAA GGTGTGCGCC ACTACCACCT
  GGTTGGCATA ATACTTTGAT TAGTTGTCTG CTCAGAGTCT CACAAGGGTA AACTCAAAGT
  GACAGCTGAC CCTGGCTCTT TCTTCAAGCT CATACAGGTC ATTGCTGGCA GAATTTAGTC
  CTCGTAGTTG CAAGGCTCCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss359472329	MGP_WTSI_3_121071929	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs248936668					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359472329	MGP_WTSI_3_121071929	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	1450 bp proximal
Gm33363	predicted gene, 33363	26 bp upstream
Rr397973	regulatory region 397973	458 bp upstream
Rr397974	regulatory region 397974	1178 bp upstream
Rr584057	regulatory region 584057	150 bp proximal
Rr584058	regulatory region 584058	609 bp proximal
Rr584059	regulatory region 584059	1197 bp proximal
Tssr31438	transcription start site region 31438	571 bp upstream
Tssr31439	transcription start site region 31439	636 bp upstream