rs248926279 SNP Detail

Summary

• ID
  rs248926279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69033678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTTTCTCCA
  GCGGAGAAGT TGACTCCTGT AGTTTGGACA TTGAAGTAAA ACCAGAGTCG GGGCGATTAG
  R
  AAAACCTGCA TGTGGAGGCG TCTCGGGCCC GGAGAAGTTC CGAGGTCGCC GCTCGCTCCC
  CCATCGCCCT CCACCCGCGA CGCTTGGCGT CGGGGGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320791955	CHEV_3_68930267	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248926279					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69033678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	within coordinates
Kpna4	karyopherin subunit alpha 4	Intron
Rr397714	regulatory region 397714	665 bp upstream
Rr578129	regulatory region 578129	370 bp distal
Rr578130	regulatory region 578130	289 bp distal
Rr578131	regulatory region 578131	141 bp distal
Rr578132	regulatory region 578132	737 bp proximal
Tssr902	transcription start site region 902	682 bp downstream
Tssr33536	transcription start site region 33536	975 bp upstream
Tssr33537	transcription start site region 33537	496 bp downstream
Tssr33538	transcription start site region 33538	691 bp downstream
Tssr33539	transcription start site region 33539	722 bp downstream
Tssr33540	transcription start site region 33540	753 bp downstream