rs248925142 SNP Detail

Summary

• ID
  rs248925142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151909971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTCTGAG AGCTGTGCTG CTGTGGACCC
  TGGCTGAGGT TGGGCTCCTC CTACTCCACA CTTATCACTA GATATCAACT CTCACCATAC
  ATAAATGAAT GCATTTTCCA CTAGATTGCA ATCTCCTAGA GGGGGTCTCG CTCCCTTTCT
  Y
  TCCCTTCCTT TCCCCCTCCT GCCTTCCCTA CCTGAACAAG ACCTTTGCAT AACACAGATA
  AACTTCTGCT GAATGAATGA ACAGAAATGG TTAGCTACAG GACTTAAAGT AAGATGTGGA
  TGCTATTGAG ACAGAGGGGA AGTTTTAAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028390	CHEV_3_151867298	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248925142					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151909971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			135 bp downstream
Rr587489	regulatory region 587489			50 bp distal
Rr587490	regulatory region 587490			152 bp proximal