rs248882667 SNP Detail

Summary

• ID
  rs248882667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62419595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGAATC GAACCTGGGT
  CCTCTGGAAG AACAGCAGTG CTATTAACTT CTGGGCCATC TCTCCAGCCC ATGACCCTTT
  TACAATTATT AGAAAATGGT GCCCTTGTTT AAGAAACCCA TATTTATATT TGAGTATGCT
  TGACTTTCCT CAGAGTCCTT CTTTCCCCCC TAACCCTCAT GCTTAATCCT GCATTAAAAT
  R
  TTATTAATAA AATTTCCAAC TTGGCTTCAT TTAAAAAAAT TACTAGTAAT GTCAAAAAAG
  AGAAAGGTTC CTGGAGACTC TGACCAACAA CATAACTGGT GAGGAGCTGG TGGAACCAGA
  GAGGGGCTGT GAACCTGCCA ACAGCCTGGA TTAGAACCCA AATGTCCAGA CTCTAGCCAG
  GGCTGCCTTT GCTTACCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142485	CHEV_4_62162392	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248882667					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62419595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			558 bp proximal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			136 bp distal
Rr593325	regulatory region 593325			74 bp proximal
Rr593326	regulatory region 593326			908 bp proximal
Tssr42008	transcription start site region 42008			818 bp downstream
Tssr42009	transcription start site region 42009			842 bp downstream
Tssr42010	transcription start site region 42010			875 bp downstream