rs24888035 SNP Detail

Summary

• ID
  rs24888035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149220476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGCCATC CTTTAACTCA
  GTTCCTCGTG TAGTAAAATT GTTTTACTAT TTAATTTTAA TACATAAACC ACAGAATTAT
  TTCATTGCTA CTTCATAACT GTAACTTTGT GAATCTCTGT TGTGAATCAT AATTATCAGA
  TAGGCAGGAT ATCTAATTGG GGTCTCAACC CACAGGTTGA GGACCACTGA AATGAAAGCA
  R
  GCTGCCAAGT GAAAACAGAT GATGGCCGCT TGGGTGCTCA CAGCTGGGCT CTAGCGATGG
  TTCTAAAGGT TCTGAATTTC TTTTTTTTTT TTTTTAAGAT TTATTTATTT ATTATATGTA
  AGTACACTGT AGCTGTCTTC AGACACTCCA GAAGAGGGAG TCAGATCTTG TTACAGATGG
  TTGTGAGCCA CCATGTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss32476196	NES05012504	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
ss46700388	NES10945187	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs24888035					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss32476196	NES05012504	PERLEGEN	MM_PANEL	f	SNP	A/G
ss46700388	NES10945187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149220476 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Cpgi15320	CpG island 15320	956 bp proximal
Rr398863	regulatory region 398863	1486 bp upstream
Rr604839	regulatory region 604839	230 bp proximal
Rr604840	regulatory region 604840	1540 bp proximal
Rr604841	regulatory region 604841	1594 bp proximal
Tssr44623	transcription start site region 44623	1517 bp downstream
Tssr44624	transcription start site region 44624	1580 bp downstream