GGTCGGGGAC AGGAAAGAAG GTGAGTGGGA GGGGGAAAAG TGCCTGGCCT GGCGCTCGGC AGGTTTTCTA CTTGGGTGCT GTGTCGAAGT GTGGTTCGCA AGCCAAGAGC GAGGGCACAA CGCGAGCCCC CTTGGTCCCA CGGGCGCGCG AGCCACGCGA ACCTCGGTAG CTTCACCTGG TTCCGTGAAC TTCGTGACAC Y CACGACTAGA GTCGCGAGCC AGCTCCGGGA ACCCACGAAT CACGGGAGAT GACAACTAGG CTGAGGTCTC CGCGTCCTAC TTTTTCTCTT CTTTAGTACC TCTACCACCA CTTCATCCCA AGCGATGCGT CGTGCCAAGC ATGGTGTCCC TTATATTTTT CTGGTGCCAG GGACAGTGAA ACTCTTGTAC TACAAGACTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss359130138 | MGP_WTSI_3_106351019 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs248857121 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss359130138 | MGP_WTSI_3_106351019 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr3:106455417 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cept1 | choline/ethanolaminephosphotransferase 1 | 299 bp upstream | ||||||
Cpgi13666 | CpG island 13666 | within coordinates | ||||||
Dram2 | DNA-damage regulated autophagy modulator 2 | Intron | ||||||
mRNA-UTR | ||||||||
Rr375539 | regulatory region 375539 | within coordinates | ||||||
Rr582855 | regulatory region 582855 | 530 bp distal | ||||||
Rr582856 | regulatory region 582856 | 219 bp distal | ||||||
Rr582857 | regulatory region 582857 | within coordinates | ||||||
Rr582858 | regulatory region 582858 | 953 bp proximal | ||||||
Tssr31115 | transcription start site region 31115 | 387 bp downstream | ||||||
Tssr31116 | transcription start site region 31116 | 363 bp downstream | ||||||
Tssr31117 | transcription start site region 31117 | 213 bp downstream | ||||||
Tssr34980 | transcription start site region 34980 | 1929 bp upstream | ||||||
Tssr34981 | transcription start site region 34981 | 523 bp upstream | ||||||
Tssr34982 | transcription start site region 34982 | 508 bp upstream | ||||||
Tssr34983 | transcription start site region 34983 | 378 bp upstream | ||||||
Tssr34984 | transcription start site region 34984 | 320 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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