rs248846302 SNP Detail

Summary

• ID
  rs248846302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150131707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCTAGCA CTTGGGAGGC AGAGACAGGT GGATTTCTGA
  GTTCAAAGCC AGCCTGGTCT ACAGCATGAG TTCCAGGACA GCCAGGGCTA TACAGAGAAA
  Y
  CCTGTCTCGA AAAAAAAAAA AAAAAAGAAA GAAAGAAAGA AAGAAAAGAA AAGAAAAGAA
  AAGAAAAGAA AAGAAAAGAA AAGAAAAGGA AGGAAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363652784	MGP_WTSI_4_149421359	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	T	C	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	C	T	T	C	C	T	T	C	T	C	T	C	T	T	T	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248846302					SNP	C	C	C	C	T	T	C	C	C	C	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	C	T	T	C	C	T	T	C	T	C	T	C	T	T	T	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363652784	MGP_WTSI_4_149421359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150131707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	849 bp proximal
Gm13067	predicted gene 13067	945 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	1079 bp upstream
Rr605155	regulatory region 605155	455 bp proximal
Rr605156	regulatory region 605156	1264 bp proximal
Rr605157	regulatory region 605157	1853 bp proximal
Tssr40363	transcription start site region 40363	941 bp upstream
Tssr40364	transcription start site region 40364	1028 bp upstream
Tssr40365	transcription start site region 40365	1923 bp upstream