rs24884353 SNP Detail

Summary

• ID
  rs24884353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149070847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC TTCCTTCCGG GCTCTTGCTT
  Y
  TCATTTGGTG CTATAACTCT ACACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss32476392	NES05012288	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T		C	T	C	C		C		T	C			C
ss46699041	NES10929646	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	C	T	C	C		C		T	C	T		C
ss148024651	ENSMUSSNP4496555	ENSEMBL	ENSEMBL_Sanger	f	SNP								T					C
ss321424116	CHEV_4_148360499	CHEVERUD	SCREENING_POP	f	SNP											T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs24884353					SNP	T	C	T	C	T	T	C	T	C	C	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss32476392	NES05012288	PERLEGEN	MM_PANEL	f	SNP	C/T
ss46699041	NES10929646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149070847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr1858	regulatory region 1858			within coordinates
Rr604814	regulatory region 604814			within coordinates
Rr604815	regulatory region 604815			1473 bp distal