rs248840350 SNP Detail

Summary

• ID
  rs248840350
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCTGAC ATTCATAAAT
  CCTCTCACGT CTCTTTTATT CTTTTTATGT TTTATTTATT GAACATTTTT TCCTTAAAAA
  TTCTATTTTT TTACATACCA TAAAAATGAT GTTATTTAAC ATGTAGCATT TGGGATTATT
  GTTTCATTTC ATTACATTAT GGTACTTTAA TTTTTAAAAA TGATTTGAAA TGTAAATCAA
  K
  TGCATAACCA TAAAATGTAA AAAATTCTAA GTTTCCTTAG AAGAGCAGCT TGCATTTAAA
  AAACTTAATA GAGTAAAAAA GAAAACGGAA ATAATTCATA TTAGTAGTTA CGAATCAAAC
  TACTCTGGTT TCATGAGTCA AATTCTAAAA TGGCGTATGT AAGTCCTAAA AAAAAAGAAT
  CATCCAATTT GGACAAGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137004	MGP_WTSI_3_60277646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248840350					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137004	MGP_WTSI_3_60277646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381145 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1275 bp downstream
Rr577397	regulatory region 577397	635 bp distal
Rr577398	regulatory region 577398	244 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1518 bp downstream
Tssr29249	transcription start site region 29249	1491 bp downstream
Tssr29250	transcription start site region 29250	1116 bp downstream
Tssr29251	transcription start site region 29251	1058 bp downstream
Tssr29252	transcription start site region 29252	1037 bp downstream
Tssr29253	transcription start site region 29253	983 bp downstream
Tssr29254	transcription start site region 29254	938 bp downstream
Tssr29255	transcription start site region 29255	918 bp downstream
Tssr29256	transcription start site region 29256	908 bp downstream
Tssr29257	transcription start site region 29257	887 bp downstream
Tssr29258	transcription start site region 29258	641 bp downstream
Tssr29259	transcription start site region 29259	596 bp downstream
Tssr29260	transcription start site region 29260	1685 bp upstream