rs248839813 SNP Detail

Summary

• ID
  rs248839813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGGCGA CTCGCGCCTG
  CGCGGTAGGC CAACTCCGGA GCCAGCACGC CCCGAGGGGG CGGGGCTTGA ACCACTTCCG
  GGCGCCAAAC CTGAGGTCGC GCGAGATCTG CTGGCCTAGG CCCATAATTT CCTGTCAGTC
  GCTAACCAGC TTGGTTTCTG GAAGTTATGT CTCCTTGCCT TTGTCTTTGT AGAGCAAGCT
  R
  GCCCACCACT TAACGCAGTC CACTTGCCTC CACCTCTGAA GGCAAAATTT AGAGACATGC
  CACCATGGAT CTCCTTTTTG ATAGTTTATC TTACGTAAGG GCAGTGTTAC AGGATTAATC
  CTTTCAGAGT TTATCAGAAT AGCCACTTTA AAATATGCCA AAGCAATGTA TTTATGGGTG
  CTGTATGTTA AAATACAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351973735	MGP_WTSI_1_155335006	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248839813					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351973735	MGP_WTSI_1_155335006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	within coordinates
Dhx9	DExH-box helicase 9	216 bp upstream
Rr396394	regulatory region 396394	55 bp downstream
Rr396395	regulatory region 396395	1222 bp upstream
Rr420682	regulatory region 420682	279 bp distal
Rr420683	regulatory region 420683	1623 bp distal
Rr420684	regulatory region 420684	341 bp distal
Rr420685	regulatory region 420685	within coordinates
Rr420686	regulatory region 420686	1044 bp proximal
Tssr9459	transcription start site region 9459	955 bp downstream
Tssr9460	transcription start site region 9460	53 bp downstream
Tssr14270	transcription start site region 14270	214 bp upstream
Tssr14271	transcription start site region 14271	195 bp upstream
Tssr14272	transcription start site region 14272	186 bp upstream