rs248830447 SNP Detail

Summary

• ID
  rs248830447
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194859559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAATTCA GTTTCAAACC
  CCATTAATGT AATCAACTCT CAGTTTGAGA AAACAGCTTA TTTTACTTAA AGTGGAAATT
  CAGAAATAAC ACTGCCTGGC ATTACAATCT TTTTACTCTA GTGTAAACAG TGAAATTTCA
  AATTTCTGTA TAACTGTAAA GGGGTTTTCT AAATGTTAAT ATTTTAGAAA TGTTATCTCT
  A
  TATAATTATA AAGATATATA AAAGTATATA TTTTGACTAT ACAATTGTGT TATGTAATTG
  TTATTTCTGA CTTTTTAAAT AAATTACAGA CATTTATCTC TTCTTTAAGT ATTTTAATGT
  GTATTTCCTA AAAATAAGGA CAATATAACT ATAGTAAAAT GATCAATTAC AAGACACTAA
  TATTGGTAAG GTAGTTTTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss352899999	MGP_WTSI_1_197003445	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs248830447					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352899999	MGP_WTSI_1_197003445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194859559 () rs orientation: forward

Symbol	Name	Function Class
Cr2	complement receptor 2	535 bp upstream
Rr426767	regulatory region 426767	194 bp distal
Rr426768	regulatory region 426768	476 bp distal
Rr426769	regulatory region 426769	358 bp distal
Tssr384	transcription start site region 384	569 bp upstream
Tssr385	transcription start site region 385	557 bp upstream
Tssr15875	transcription start site region 15875	605 bp upstream
Tssr15876	transcription start site region 15876	526 bp upstream
Tssr15877	transcription start site region 15877	468 bp upstream