rs248794274 SNP Detail

Summary

• ID
  rs248794274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19317629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGCTTTA TACACCAAGA CACAAGCTTA
  ACAAACGTTT CTTAAAAGAT CAAAAATTTT AAGGCCACAT ACTGGTAGAA TTTTATCTTT
  AATAAAACTA GAAAAACAAA TTTTATCAAA ATCCTGTGTC TACATCAGTC CTGATGTCCC
  R
  TGGGCTGCCG TCCACATTCC CATTACATTT CTCTAGAATA GAAATAACCA AGGCGCCTAC
  TCGTGACTCT TCTAATTTAG CCATCCTGGG AACAGCTTGT AAAGCAAACT AGTATAGGTC
  AAAACATGGG CGAGGCCAAG CTAATCAGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678289	CHEV_3_19163465	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248794274					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19317629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			within coordinates
Rr573967	regulatory region 573967			1490 bp proximal
Tssr32690	transcription start site region 32690			1462 bp downstream
Tssr32691	transcription start site region 32691			1494 bp downstream
Tssr32692	transcription start site region 32692			1532 bp downstream
Tssr32693	transcription start site region 32693			1542 bp downstream
Tssr32694	transcription start site region 32694			1631 bp downstream