rs248786554 SNP Detail

Summary

• ID
  rs248786554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:34074658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACGCGGGC GGGCGGGCGG GCTGGAGCGG CGGGCTGTGG
  TGCGGGCGCG CCGCCGAGGC CTGGCGGGGT GGGGGGCGCG GACGGGCGGA CTGAGGGACG
  R
  ACTGAGGCGG GCAGCTCACT GCGACCCCGC GGCGGCGGCC GGGCCCGCCA GGCTCCTCTC
  CGCCCGCCCG CCCTCCCGCC CGCGGCATGA ATGGCTGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357502401	MGP_WTSI_3_33919431	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A	A	A	A	A	A	G	A	A	A	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248786554					SNP	A	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A	A	A	A	A	A	G	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357502401	MGP_WTSI_3_33919431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34074658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	within coordinates
Fxr1	FMR1 autosomal homolog 1	Intron
Gm43077	predicted gene 43077	627 bp upstream
Rr575095	regulatory region 575095	722 bp distal
Rr575096	regulatory region 575096	391 bp distal
Rr575097	regulatory region 575097	within coordinates
Tssr28785	transcription start site region 28785	626 bp downstream
Tssr28786	transcription start site region 28786	593 bp downstream
Tssr28787	transcription start site region 28787	583 bp downstream
Tssr28788	transcription start site region 28788	570 bp downstream
Tssr28789	transcription start site region 28789	546 bp downstream
Tssr28790	transcription start site region 28790	427 bp downstream
Tssr28791	transcription start site region 28791	399 bp downstream
Tssr32968	transcription start site region 32968	697 bp upstream