rs248781778 SNP Detail

Summary

• ID
  rs248781778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135751045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatttctga gttcgaggcc agcctggtct
  acagagtgaa ttccaggaca gccagggcta tacagagaaa ccctgtgtcg gaaagaaaga
  aaggaagaaa gaaagaaagg aaggaaggaa ggaagaaaga aagaaagaaa gaaagaaaga
  R
  agaaagaaag aaagaaagag agagaggaag gaagaaGACA AACTGTCTAG TTAAGAAGGA
  ATACTGAATT CTCTTCTCCT GGAAAACAGC ATACAAAGTC CTCCAGTTGA ACATGTTTGT
  TTTGCTTAAC TGTGGCCACA GTTCTCCTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353742	CHEV_4_135579649	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248781778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135751045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1620 bp distal
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1762 bp downstream
Rr602239	regulatory region 602239	1982 bp distal
Rr602240	regulatory region 602240	1723 bp distal
Rr602241	regulatory region 602241	1533 bp distal
Rr602242	regulatory region 602242	1768 bp proximal
Tssr44025	transcription start site region 44025	1998 bp upstream