rs248776814 SNP Detail

Summary

• ID
  rs248776814
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134342358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG GCTGGGCTCC ACCTGGGAGC
  W
  GGGCGGAGCA CCGGACAGCC AGGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321695456	CHEV_5_134789374	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248776814					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134342358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			1298 bp upstream
Gm71761	predicted gene, 71761			within coordinates
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			1265 bp upstream
Rr399401	regulatory region 399401			within coordinates
Rr621987	regulatory region 621987			1137 bp distal
Rr621988	regulatory region 621988			within coordinates
Rr621989	regulatory region 621989			261 bp proximal
Rr621990	regulatory region 621990			1168 bp proximal
Rr621991	regulatory region 621991			1309 bp proximal
Tssr1657	transcription start site region 1657			1452 bp downstream
Tssr49086	transcription start site region 49086			142 bp upstream
Tssr49087	transcription start site region 49087			169 bp upstream
Tssr49088	transcription start site region 49088			475 bp upstream
Tssr49089	transcription start site region 49089			1442 bp upstream
Tssr53628	transcription start site region 53628			955 bp upstream
Tssr53629	transcription start site region 53629			285 bp upstream
Tssr53630	transcription start site region 53630			283 bp downstream
Tssr53631	transcription start site region 53631			902 bp downstream
Tssr53632	transcription start site region 53632			939 bp downstream
Tssr53633	transcription start site region 53633			952 bp downstream
Tssr53634	transcription start site region 53634			981 bp downstream
Tssr53635	transcription start site region 53635			1010 bp downstream
Tssr53636	transcription start site region 53636			1054 bp downstream
Tssr53637	transcription start site region 53637			1133 bp downstream
Tssr53638	transcription start site region 53638			1174 bp downstream