rs248664077 SNP Detail

Summary

• ID
  rs248664077
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119468733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCAAC TGACTCCCAC
  AGCCTGAAAT TCCATTTCCT CAATGAAGAT GGAGTGTGGC TCTGGGGAGC CCAACAAGAC
  AGAAGCTTAT ATTTTAGATA ACTTTCCCCA GATGTCCACC CAAAGGAACC CCCAGTCCTA
  ATAGCAAGAC TATAGACAGA ACGTTCTCTT GCCCGCCACC CCCCCCCACC CCCACCCCCC
  C
  GCACCCGCCT TCCCTAATCC CTCAGTGCTT CCTTCAAACA GTGTCCATCT GCCCTAAAAA
  GGGACCCAGC ACCAGCCTTC CTTTCTTCCT TCCTTTCTTT GGTTAGCCCT GGCTGTCCTG
  GAACTTGCTC TGTAGACCAG GCTGGTTTTG AACTCAGAGA TTCGTCTGCC TCTGCCTCCC
  AAATTCTGGG ATTAAAGGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ZALENDE/EiJ
ss369848083	MGP_WTSI_6_119441790	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ZALENDE/EiJ
rs248664077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369848083	MGP_WTSI_6_119441790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119468733 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	1395 bp distal
Rr637699	regulatory region 637699	1843 bp distal
Rr637700	regulatory region 637700	84 bp distal
Rr637701	regulatory region 637701	809 bp distal
Rr637702	regulatory region 637702	32 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron