About   Help   FAQ
rs248561818 SNP Detail
Summary
  • ID
    rs248561818
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:52995336 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCACATTTT CTGGTTTAAA
    TTTTATAACC ATACATCTCA CAGGAAAAAA AGATTAATTT ATAATTGAAG AGGGCAATTA
    GAGATAGAAA TAACTGGTTG TTACTAAATC TTTGTTTTTG ACAACTTGGC CACTGCCTGG
    CACCTGAAAA GATGTTTCCA TGATGAAAAT AAAGGGAAGT GTGGAAGTTT CTCCCCATTC
    Y
    GCTGGGTTTA TATTCTCTTT GCAAAGGTTA CAAGCAGCTG TGAAAGCAAA GAAGCAGAGA
    TGCAGGAGAA GGAGGAACAC ATAACCTAAA GAAGCCTTTG TTTGCCACCA ACACTGGGAA
    GTCCTTGGGT TCAGAGCAAG ACTTCAAACC TCACATATTT GCTATGACCA AGAAGTGTTT
    CATGGTTCAA CTACTGGGAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320766773 CHEV_3_52891837 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs248561818 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:52995336 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lhfpl6 LHFPL tetraspan subfamily member 6 Intron
Noncoding-Transcript-Variant
Rr576641 regulatory region 576641 779 bp distal
Rr576642 regulatory region 576642 202 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory