rs248561818 SNP Detail

Summary

• ID
  rs248561818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52995336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACATTTT CTGGTTTAAA
  TTTTATAACC ATACATCTCA CAGGAAAAAA AGATTAATTT ATAATTGAAG AGGGCAATTA
  GAGATAGAAA TAACTGGTTG TTACTAAATC TTTGTTTTTG ACAACTTGGC CACTGCCTGG
  CACCTGAAAA GATGTTTCCA TGATGAAAAT AAAGGGAAGT GTGGAAGTTT CTCCCCATTC
  Y
  GCTGGGTTTA TATTCTCTTT GCAAAGGTTA CAAGCAGCTG TGAAAGCAAA GAAGCAGAGA
  TGCAGGAGAA GGAGGAACAC ATAACCTAAA GAAGCCTTTG TTTGCCACCA ACACTGGGAA
  GTCCTTGGGT TCAGAGCAAG ACTTCAAACC TCACATATTT GCTATGACCA AGAAGTGTTT
  CATGGTTCAA CTACTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766773	CHEV_3_52891837	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248561818					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52995336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576641	regulatory region 576641			779 bp distal
Rr576642	regulatory region 576642			202 bp distal