rs248556539 SNP Detail

Summary

• ID
  rs248556539
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37367381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTAATACT AATTTTAAAT AGATTTCTGA AACCCAGAAA
  CGAATATTAG TCAGACAGAT AGGCAGGCAT TCCCGCGCTC ATACACACAA ACACACACAC
  S
  GGGGTGGGGG GGGGGAGGAG AGGGGGGTGG AAGCTGCCTT TTAGACATTC CTGAATATCA
  TTTGATCTGA TGACTATCAA AAGGCTGCTA AACCTAAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SWR/J
ss357581245	MGP_WTSI_3_37212154	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	SEA/GnJ	SWR/J
rs248556539					SNP	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357581245	MGP_WTSI_3_37212154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37367381 () rs orientation: forward

Symbol	Name	Function Class
Bbs12	Bardet-Biedl syndrome 12	Intron
Cetn4	centrin 4	786 bp upstream
Cpgi13095	CpG island 13095	318 bp distal
Gm43439	predicted gene 43439	within coordinates
Rr397646	regulatory region 397646	628 bp downstream
Rr575453	regulatory region 575453	823 bp distal
Rr575454	regulatory region 575454	666 bp distal
Rr575455	regulatory region 575455	within coordinates
Rr575456	regulatory region 575456	506 bp distal
Tssr28894	transcription start site region 28894	657 bp downstream
Tssr33051	transcription start site region 33051	767 bp upstream