rs248537648 SNP Detail

Summary

• ID
  rs248537648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137773097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTACAC CCGCCCTTTC
  CCTTCCCCCT TTCCTACATG TGGATTAAAC CCTGGGGACA TAGTACATGT GTGTACTAGA
  TGCTCAGGCA CGCCACCGCA ATGACAGCCT CCACTGCCTT GGAAAGGTTT TTTCTTTTTT
  CTTTTTTTTT TTAAATTTAA ATAAGTTGAT CTTAAATTAC CTTTTTTTTT CTTTCTTCCT
  Y
  TTTTTTTTTT TTTTTTTTTT GGTATTTTGA GAGAAGGTTC CTTGGCTGTC CTGAAACTCT
  GTAAACTATA GACCAGGTTG GCCTTGACTT TATTGATCTA TGGTCCATTT GCTTCTGTCT
  CTCATGTGCC ACTACTATGT TGTAATGTGT ATGCGTGTTG CCTACATGTG TGCAGTTCCC
  TTGGAGGCCA GAAGAGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J
ss363430677	MGP_WTSI_4_137601701	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J
rs248537648					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363430677	MGP_WTSI_4_137601701	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137773097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			184 bp proximal
Rr602828	regulatory region 602828			276 bp proximal
Tssr39818	transcription start site region 39818			432 bp downstream
Tssr39819	transcription start site region 39819			19 bp upstream