rs248534725 SNP Detail

Summary

• ID
  rs248534725
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102030587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AACCCTTAAT CTATGGGATT
  C
  GTCCAGGAAA TTTGTTTTTT GTTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854502	CHEV_3_101927194	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248534725					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102030587 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	1917 bp distal
Rr582183	regulatory region 582183	926 bp distal
Rr582184	regulatory region 582184	1071 bp distal
Rr582185	regulatory region 582185	1006 bp distal