rs248446073 SNP Detail

Summary

• ID
  rs248446073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116647944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCAACA TCTAAAGTAA
  AATGTAAGTT GGTCAGTGAG ACCAGACAGC TTGGCCATCT CTGCTCTCAC CTGTCCTGGT
  ACGCACGATT CGTTGATGCG AACCAATTAA GACATAAAGC AGCTTGAGCG GCAATAAAAA
  GGGGACAGGG ACAGGCACAG CCAAAGGCCT CCAGCAGGCC AGAAGGGAGG CAGATGCAGG
  Y
  TACACTGCCC TGTACAACTG GGAAGCCTGT GCCCCCTGCT CCTAATGCTG GGGACAGGAG
  TCCAGACACT GAAAACAGTG AGCCTCTAAA AGACCGTTTC AGCACCTGTC AGCCCTCACA
  GAGCCGGGGC TTCCCCAGAG AGCAGCCAGC TGTCTGCTGA GGGGATCCGG CTGGACACAG
  GCTGTCTGTC CTTAGTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369778431	MGP_WTSI_6_116621001	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248446073					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369778431	MGP_WTSI_6_116621001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116647944 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	1671 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	1877 bp distal
Rr637229	regulatory region 637229	1800 bp distal
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	702 bp distal
Rr637232	regulatory region 637232	256 bp proximal
Rr637233	regulatory region 637233	1270 bp proximal
Rr637234	regulatory region 637234	1682 bp proximal
Tssr58383	transcription start site region 58383	1585 bp downstream
Tssr58384	transcription start site region 58384	1516 bp downstream
Tssr58385	transcription start site region 58385	562 bp upstream
Tssr58386	transcription start site region 58386	811 bp upstream
Tssr62606	transcription start site region 62606	424 bp downstream
Tssr62607	transcription start site region 62607	1456 bp downstream