rs248427779 SNP Detail

Summary

• ID
  rs248427779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:112766572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAATACG TATAAGAATT
  TTCACATGGT GCTTGCATGA TGTATACAGT GGTACAGACT GCCTAGTTAG ATAAAGAAAA
  TATAGTTAGG ACTTCAAGCA TCTTTGCTTT AAACTCTTTC CTCTTCAAAC TAAGTGTAAA
  ACTCTACTTT CCAGGTCTAG TACAAATTCA GAGACATTTG TGAAGTTTAG ACTTTTTTCT
  R
  CAGGTCTTGG TTTGGGTCTG ACTGTCTAGC TTCATGTCTA GCATGCTTTG ACATTTGCTG
  GTGCTAACAC ATTTATTGCC AAACAAAAGT TCTTATTAAC AGACAACTGT CCTTTGTCAT
  TATCGATGTA TAATTTGTTC ATGCCAGGTC ATTGAAAAAT CTTTGTTCCC TTAATTTGAC
  AAAACAAATA GGAGATTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381802005	MGP_WTSI_10_112367723	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248427779					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381802005	MGP_WTSI_10_112367723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:112766572 () rs orientation: forward

Symbol	Name	Function Class
Atxn7l3b	ataxin 7-like 3B	1666 bp upstream
Gm22507	predicted gene, 22507	757 bp upstream
Gm26596	predicted gene, 26596	within coordinates
Rr439117	regulatory region 439117	1182 bp distal
Rr439118	regulatory region 439118	1236 bp distal
Tssr95800	transcription start site region 95800	754 bp upstream
Tssr99293	transcription start site region 99293	1822 bp upstream
Tssr99294	transcription start site region 99294	1791 bp upstream
Tssr99295	transcription start site region 99295	1766 bp upstream
Tssr99296	transcription start site region 99296	1740 bp upstream
Tssr99297	transcription start site region 99297	1694 bp upstream
Tssr99298	transcription start site region 99298	1653 bp upstream