rs248417020 SNP Detail

Summary

• ID
  rs248417020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGGTGG GGTGGAGTAG
  AATGGACCTC CAACTACAGA CCAGAGGCAG GGATTCTGAA GGATCAGGCT GGGTAGGACA
  CTGCAGGCGA CTCCTGCCGG GCTTTTCCCT CCAGCTCTTA TAAGCTCCTG TACCTGTAGG
  ACTGGTTAGC TAGTGACTCA CTCAATGGAA TTTGGGTGGC GCTCCCTATT CCCAGGTCCC
  K
  CGGAAGAAGC CGGCAGCCCT GAGCTGCCTG AGATAGAATC AGGCAGGGGA GATTGCTCCT
  GCCATCTGCT GACCAAAACC CCATAGAGGA AACCAGTACT TACCTGGCCG CACCCCTCCT
  CATAGCTCAG AACCAGGGCG TCCCACCTTT CCTAGTGCAC CTCAGGAGTT TCTCCAGAGG
  CCCAGCTCCC GACTCTCACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368651699	MGP_WTSI_6_67485896	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248417020					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368651699	MGP_WTSI_6_67485896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512886 () rs orientation: forward

Symbol	Name	Function Class
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1090 bp distal
Rr631669	regulatory region 631669	647 bp distal
Rr631670	regulatory region 631670	96 bp distal
Rr631671	regulatory region 631671	within coordinates
Rr631672	regulatory region 631672	56 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	106 bp upstream
Tssr1872	transcription start site region 1872	1121 bp upstream
Tssr61255	transcription start site region 61255	1157 bp upstream
Tssr61256	transcription start site region 61256	676 bp upstream
Tssr61257	transcription start site region 61257	205 bp upstream
Tssr61258	transcription start site region 61258	100 bp upstream
Tssr61259	transcription start site region 61259	32 bp upstream