rs248407999 SNP Detail

Summary

• ID
  rs248407999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:130135380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGGGGG AGACAAGGGT
  ATCAGAGATT ACCTGCCCCA TCCCACTCCA AAGCCTGTGG GCTGCCGGAG GCGCTGATAT
  GGACACACAC AGAGGGTGCA CTGGCTTGTG AAGGGTGAGT ATGTGGGAAC TAAGTTGTAC
  CACTGTGGCC TACCAGCCCA GTCACTTGTG CTGGGGGCTC TTCCTGCTCC TGTCTTGCCC
  Y
  GTGATCCAGC CCAGCTCAAA TTTCCCCGGT TGATGGGCAG CACAGACAGA AGACAGAAGC
  CCAAGCTAGA ATGTGGTCTT CTCAAACACA GCCTCACAGA CTGTGGGGAA CACATGGATT
  CTTGAATAAC AATGAGGGGG CGGGGTATAC ACAGCAGCCT AGCATCCTCA TAGGGTGGGA
  GGAGATAGGG ATCACACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355659334	MGP_WTSI_2_130119196	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248407999					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355659334	MGP_WTSI_2_130119196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130135380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12260	CpG island 12260			1168 bp proximal
Ebf4	early B cell factor 4			mRNA-UTR
				Noncoding-Transcript-Variant
Gm74723	predicted gene, 74723			1041 bp downstream
Gm74727	predicted gene, 74727			within coordinates
Rr565032	regulatory region 565032			1326 bp distal
Rr565033	regulatory region 565033			1785 bp distal
Rr565034	regulatory region 565034			within coordinates
Rr565035	regulatory region 565035			92 bp proximal
Rr565036	regulatory region 565036			1219 bp proximal
Rr565037	regulatory region 565037			1989 bp proximal
Tssr652	transcription start site region 652			1155 bp downstream
Tssr20205	transcription start site region 20205			1688 bp upstream