rs248376594 SNP Detail

Summary

• ID
  rs248376594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29694401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCTGGT CTGCGGCCGC
  GGTGGAGTCT CCGCTGCTCA CGCTGCCCGC CGCGGCTTCA GCGGCGGCGC CGTTCCCTGG
  CCGCGCGGCT CCCCGACGCA CGGTTCGGGC GGCTCCCGGC GCGGCGCGGC TGCCCCGGCG
  TTCGGGTCCC CGTGGCCCCG CGGCTCCCGC CCCGGGCTGC AGGGCGCACA GGTGGGCCGG
  Y
  GGCCGCTGGG AGATAGGCCC CCCGGGGGCA GCGGCGGACC ATGGCGCGGA GACCTGGCGT
  GCCGGCTGCC TACGGGGACG AGTTCTCCTT CGTCAGCCCG CTGGTGAAAT ACCTGCTCTT
  CTTCTTCAAC ATGCTCTTCT GGGTGAGATT CGGGGGGTCA GGGGGCACCC GGACTCTCGG
  GCATCTCTGG AGCGCCGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367818917	MGP_WTSI_6_29644402	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248376594					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367818917	MGP_WTSI_6_29644402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29694401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17240	CpG island 17240	within coordinates
Rr627610	regulatory region 627610	158 bp distal
Rr627611	regulatory region 627611	within coordinates
Rr627612	regulatory region 627612	284 bp proximal
Rr627613	regulatory region 627613	332 bp proximal
Tspan33	tetraspanin 33	mRNA-UTR
Tssr1798	transcription start site region 1798	148 bp downstream
Tssr55283	transcription start site region 55283	208 bp downstream
Tssr55284	transcription start site region 55284	152 bp downstream
Tssr55285	transcription start site region 55285	131 bp downstream