rs248345345 SNP Detail

Summary

• ID
  rs248345345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtgtgtgtg tgtgtaggga gggagggagg
  gagagaggga gggagggagg gagggaggga gagagagaga gagagagaga gagagagaga
  gagagagaga gagagagaga gagagaCTGA CTCTGTGTCA CGGGGCCTAG GCGGGGCAAG
  Y
  GCCCTCTGAA GCCATCAAAG ACAGGGTGGC TTTTTTCCCC CTCCTCCATC CTCCTCCCCA
  ATAGATATAG CACGAATTTT TAATGCGTCT TCCTTTCACA GACAACAATA CAGGGTTTGA
  AAGCCGGACA CAATTTGGGT TTTGTGCGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548199	CHEV_2_147006403	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248345345					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12377	CpG island 12377			1573 bp distal
Cpgi12378	CpG island 12378			150 bp proximal
Nkx2-2	NK2 homeobox 2			Intron
				Noncoding-Transcript-Variant
Rr406682	regulatory region 406682			within coordinates
Rr566759	regulatory region 566759			1084 bp distal
Rr566762	regulatory region 566762			1690 bp distal
Rr566763	regulatory region 566763			26 bp proximal