rs248338629 SNP Detail

Summary

• ID
  rs248338629
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116530783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACTAGC TCCTTCATTA
  ACCCTTTGGG ACCTGAGCAT TGGGCAGCCA TTATTACTTG AATGGCCAAT TAGTAGGTAA
  TTAGTGCTCT GGAACTCTGT GGTCAGGTCC TGCTTAGAAA CCCTCTTGAG AATGAAACAG
  TAAATTCAAG ACATGGGGGT GGCTTGTGGT GGCACAACGT GAAACCCAGC CCTAGGTAGG
  M
  TCAGGCAGGA CGAACATGAG TTTGACTGAA GCCTGGGCTA TGTAGTAAGC CTCTATCTAA
  AGGAAGGACC AAAAGGAGAG AGGGAAAATC TAGCCTGTAA CTCCTATTTA TCAAAAACAT
  TCTTCATTGA AATCCTCACA CTGGGCCCTG GGGATGTATG TCAGTAGTAA TAGTGTGTGT
  TTACATGCCT GTGACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277715	CHEV_4_116346191	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248338629					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116530783 () rs orientation: forward

Symbol	Name	Function Class
Gm25137	predicted gene, 25137	567 bp upstream
Rr597955	regulatory region 597955	1999 bp distal
Rr597956	regulatory region 597956	285 bp distal
Tssr38541	transcription start site region 38541	1400 bp upstream