rs248315109 SNP Detail

Summary

• ID
  rs248315109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116461256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAAATA AAAAATAAAA
  ATAAAACTCA ACAAACCAGA GTAGCTTTCA GTGCCAGTTC GGCTACATTC CCACTCCGCT
  GAGATTCCTT TGCGTCTTCT ATCTTCTCTC GAATTTCAGG TAGCAGTTCT TTCAGCTCCT
  CAATTTCTTT CTCATATTCA GTAAACGATC CTTCGGCCTC CTTCATCTGC TCATGGAGTA
  Y
  AGCTACAAAG AACAGCTTTA AATCACTAAC AAAAAAACCC AGTTTCCCCC CACAATGTAA
  ATGACGGTAT CACCTAAACA TACAGTAATT TCTGTTCACT CACCCATTCT CTTTTCAATG
  ACATCGATAG ATTTGCCAAA CTGTGCTACT GCTTCATCAT ACTGAGAGTT GTAACCATAG
  GCCAAACCTA ATTGGTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277575	CHEV_4_116276664	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248315109					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116461256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Coding-NonSynonymous
				Noncoding-Transcript-Variant
				Splice-Site
Rr597935	regulatory region 597935			1266 bp distal