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rs248295552 SNP Detail
Summary
  • ID
    rs248295552
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:96091611 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCCCTTCCC AAACACTCTG
    TCTCTCTGAA ACCTGCAAAT TATCCAGAAT TATGCACATG CATATATATG TGTGCATAAT
    GTTTATTTTT GCTGACTATC ACTGGCTTTG AAAGAGTATC AATTTCCACA GATAAGGAAG
    TCATCCTAGG AGGTCACAAG CAGGTTTTCA GTGCATAGTG GAAATTCTTG AAGGGTGTCA
    W
    TTGACAGAGG AAAGGTGCTC AACCTTGATT GCACAGCCCC TCTCTGAGAC CTCAGAGAGG
    AAAGGCTGTC ACTAACTGAA TTCTTATATA GGGGGTGCTT CCTATGACTG GCTGACTAAG
    GACGATCCTT CAAGTTTGAT TAATTTGGCA ATATGAAATG CAGCATAAGG TGTTGTTTGG
    GAAATTGGAC AATATGTAGC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369296245 MGP_WTSI_6_96064624 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248295552 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss369296245 MGP_WTSI_6_96064624 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:96091611 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
2900060L22Rik RIKEN cDNA 2900060L22 gene Intron
Noncoding-Transcript-Variant
Rr635053 regulatory region 635053 1480 bp proximal
Rr635054 regulatory region 635054 1740 bp proximal
Tafa1 TAFA chemokine like family member 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Tssr57824 transcription start site region 57824 1513 bp downstream
Tssr57825 transcription start site region 57825 1503 bp downstream
Tssr57826 transcription start site region 57826 1460 bp downstream
Tssr57827 transcription start site region 57827 1178 bp downstream
Tssr57828 transcription start site region 57828 619 bp upstream
Tssr62190 transcription start site region 62190 1284 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory