rs248289779 SNP Detail

Summary

• ID
  rs248289779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141307881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACTCTA AAGCAGCAAT
  TTTCAACCTG GGGGTTGAAT AACCCTTTCA CGTGGGTCTA ATATCAGATA TTTATATTAT
  TATTCATAAC AGTTATGTTT CAAAACTATA GTTATGAAAT ATCAGAGAAA TAATTTTATT
  GTTGAGGTCA CCACAACATG GGGAACTATA TTAAATGTTC TGCAGTATCA GAAAAGTTGA
  R
  AACCACTGCT CTAGAGAACC AGCCATGGTA TCTGCCACAG AGAGATAGTA ATGCCCACTT
  AACAGACTGG AGCATAGATA TAAGACTATA ATACATAGGG AAGGTACTAT AGTAACAGTG
  CATCAAGAAT CCCATGACTT TATATTGTTA TTATCATTTT GTCACTTACA GGGGCCATCT
  TATGCTTTTA AGAGAGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993700	CHEV_3_141265084	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248289779					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141307881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586341	regulatory region 586341			474 bp distal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant