rs248268526 SNP Detail

Summary

• ID
  rs248268526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141978945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTATAT TTGGTAAGAC
  AGTAATATTT TTATACACAT ATTTGCATCT AGTGATTTAA GTTTACCTAA TCTGGTGATC
  ATAACTTACT AGGAATGTAG AAAAACCATT ACATAGCAAA TTAGGTCACC TACAAAAACA
  CAGGTATATA TTTTTAAACT ATTACTATTA AATTTACAAA GGTTTAAAAA TACTCATCTA
  R
  CCACTTATTA TTTATATATA ATATGAATCT TTCACAAATA AAATTTTAAT ACATAAATAT
  TGAGGCTGTA CGATGTAGCT CAGTGGTACG GCATATGCCT GGGATGTATG ACGCCCAGGG
  ACTCATCCCT AGCTCTTCAA ACAAACAAAA GTGAATTCAA TATAGGTTTA AAAAAATCCC
  AATTCTGATA AATAACAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999826	CHEV_3_141936148	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248268526					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141978945 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	1917 bp upstream
Rr586404	regulatory region 586404	1316 bp proximal
Rr586405	regulatory region 586405	1920 bp proximal