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rs248252247 SNP Detail
Summary
  • ID
    rs248252247
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:106456546 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAGTTTTCT TATATATTTT
    TAAGTCATCT TAAAGCTTTC TTTTTTGGTT CTGGAAATTG AACTTAAGGC CTCTTGTTTG
    CTATGCAAAC ACTCTTTAAA AGGGTTCTTG AATGCTTTGA CCCATAAAAT AGTTAAACAT
    TACACTCGTA ATCCTGTTGG TCTGAGACTG CTCTCACGTT TCCTTTTTGG AGGGGAAGGC
    R
    CTGGACAGTT GTTAGTCTTC CATGTTACTC TTCCTGTCTA CTTTGGTTTC TCACTTGTCT
    CCGAAAGACT CTTAACAATA TTTTAAGCCC TGCCTTGCTT CTAAGCAGTC AGTTTAAACA
    GCTAGAATCT TCAAAGCCTA AACACATACA AGTATTTAAT ACCTCAAAAA AATTATATGC
    AGCCATGTAT GGGTAGTTAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359130155 MGP_WTSI_3_106352148 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A G A A A G G G A G A A A G A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248252247 SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A G A A A G G G A G A A A G A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359130155 MGP_WTSI_3_106352148 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:106456546 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cept1 choline/ethanolaminephosphotransferase 1 1428 bp upstream
Cpgi13666 CpG island 13666 869 bp distal
Dram2 DNA-damage regulated autophagy modulator 2 Intron
Rr375539 regulatory region 375539 177 bp downstream
Rr582855 regulatory region 582855 1659 bp distal
Rr582856 regulatory region 582856 1348 bp distal
Rr582857 regulatory region 582857 456 bp distal
Rr582858 regulatory region 582858 within coordinates
Tssr31115 transcription start site region 31115 1516 bp downstream
Tssr31116 transcription start site region 31116 1492 bp downstream
Tssr31117 transcription start site region 31117 1342 bp downstream
Tssr34981 transcription start site region 34981 1652 bp upstream
Tssr34982 transcription start site region 34982 1637 bp upstream
Tssr34983 transcription start site region 34983 1507 bp upstream
Tssr34984 transcription start site region 34984 1449 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory