rs248203325 SNP Detail

Summary

• ID
  rs248203325
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88786692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATCCGC ACAGGTGTTT
  CGCTTTCCTT GTGACTCTGA GTTTCTTTGA AAAGTGAAAA ACCACGGGAA AAAAGCGAAA
  GTTTCGGGCA ACTGCTGAGA GTGGTATGTG CTTGTTTGTG AGATGTGCTT TTGGGGCGGA
  AGGAATGACC CGCTACAGTG ACGTCATAGA GGCAGGAAAC CGCGCGTAGC TGATATCCAC
  G
  CCCCCTGCCC CCCCCCCCCC CCCCCCCGTT ATCCTCATCC CAGAAGGCAG CACAGAGGAC
  TATCTGGTTG GCTGGCTCCA AAAGGCACAG GAGGTCCTTT CTTAACAAAA ACTGACCCAG
  TGCCAGAATA TTCTTTGTCT GTCATTCTTT GAGATTATTT TATAAAACAT CAAGTCTCCA
  TATGCACCAT ACGTGCGTGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss362333931	MGP_WTSI_4_88514359	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs248203325					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362333931	MGP_WTSI_4_88514359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88786692 () rs orientation: forward

Symbol	Name	Function Class
4930553M12Rik	RIKEN cDNA 4930553M12 gene	75 bp upstream
Cpgi14432	CpG island 14432	5 bp distal
Gm69755	predicted gene, 69755	within coordinates
Rr398331	regulatory region 398331	929 bp downstream
Rr595126	regulatory region 595126	86 bp distal
Rr595127	regulatory region 595127	896 bp distal
Rr595128	regulatory region 595128	within coordinates
Rr595129	regulatory region 595129	2 bp proximal
Tssr37771	transcription start site region 37771	19 bp upstream