rs248099585 SNP Detail

Summary

• ID
  rs248099585
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60408537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTGCTG AGAAAGATAC
  CCACCAACAC CCGTGCAAGC TTCTTTCCCG CCCTTCGCCT TCCAGGTTCC AGGCGATGCG
  CTGCTTCTGC TGCTGCAGGC CGGGCAGCTA ACTCTAACCT TCCGTCTAAC CTTGCGGGCC
  TCGCGGGCTG GGCGCGGAGC CCCGGGAGCT GGAGCGGCGG TGAGCGGCGC GGGCCCGGGC
  K
  AGCGAGCGGG CGGGCGGGCG GGGGCCGGGG CTGCGCGTGG GAGCTCTGCG CGTCCGCGCG
  CCTTCCTGGC GGGGCTGGCG CGGGGGAGGG GCCGCGCAGC GGCGGAAACC GGCGCGCGGC
  GATAAGAGGC TGCACGGCGA CATGCCACAG TCTCTCGCCG CAGCCCGTCG AGTCGGGGCG
  CTCGCCATGC TCCCGTGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137413	MGP_WTSI_3_60305038	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248099585					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137413	MGP_WTSI_3_60305038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60408537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13210	CpG island 13210			within coordinates
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577409	regulatory region 577409			1428 bp distal
Rr577410	regulatory region 577410			within coordinates
Tssr887	transcription start site region 887			745 bp upstream
Tssr29278	transcription start site region 29278			411 bp downstream
Tssr29279	transcription start site region 29279			321 bp downstream
Tssr29280	transcription start site region 29280			98 bp upstream
Tssr29281	transcription start site region 29281			141 bp upstream
Tssr29282	transcription start site region 29282			261 bp upstream
Tssr29283	transcription start site region 29283			768 bp upstream
Tssr29284	transcription start site region 29284			861 bp upstream
Tssr29285	transcription start site region 29285			1154 bp upstream
Tssr33421	transcription start site region 33421			612 bp downstream
Tssr33422	transcription start site region 33422			709 bp downstream