rs248059545 SNP Detail

Summary

• ID
  rs248059545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114815631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acatcataa ccaaggcagc ttacagtaaa
  aagagtttat tggggcttat agtttcagac attagagtcc atgtccatcg tggcagggaa
  catggtagca ggcaggcaga catggcgctg gaataatagc tgagagctca cttcttgatc
  Y
  acaaacacaa ggcagaggga gagctaactg ggagtgtctg ggcgtttgag acctccacac
  ccatccccca tgacatacct cctccaacaa agccaagcct cctgatcctt ctcaaacagt
  tccaccagct atggactaag cattcaaata                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914849	CHEV_6_114788688	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248059545					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114815631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			258 bp proximal
Rr636841	regulatory region 636841			1609 bp proximal