rs248020362 SNP Detail

Summary

• ID
  rs248020362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155118752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCGCAG CTTCGGTGAG
  GCCCTGGGGG GCGAACTGCC ATCGGGGATC GAGGGATGGG GGTGCCAGTC GACCCCGATT
  GCCGCAGGTG ACGTCAGCCC CATGACGTCA GGCACCGGCC GGCCGGACCC CGGGTGGAGA
  GGCCGCAAGG CCTGGCAGGG TCGCCCGCCT CCCTACCGCG TCCCCCCGGT GGAGGGCTGC
  R
  GGGCCGACGG CCCCGGGGGC GGGCGCTGGG GCGGGGCGGG CCGGGAGCCG CCCCTCGGGG
  ATCAGCGAGG CGGAGTCGCG GGAGGCCTCA GCACCGCTGG GCCTCACACA GAGCTCTGTC
  CGCAGCCGAC CGCTGTAAGG AGGTGCAGCA GATCCGCGAC CAGCACCCCA GTAAGATCCC
  GGTGAGTCTC TAGCACCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356211910	MGP_WTSI_2_155102568	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248020362					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356211910	MGP_WTSI_2_155102568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155118752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75512	predicted gene, 75512			563 bp upstream
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha			Intron
				Noncoding-Transcript-Variant
Pigu	phosphatidylinositol glycan anchor biosynthesis, class U			1411 bp downstream
Rr568016	regulatory region 568016			586 bp distal
Rr568017	regulatory region 568017			525 bp distal
Tssr21073	transcription start site region 21073			482 bp downstream
Tssr21074	transcription start site region 21074			358 bp downstream
Tssr21075	transcription start site region 21075			338 bp downstream
Tssr21076	transcription start site region 21076			279 bp downstream
Tssr21077	transcription start site region 21077			240 bp downstream
Tssr21078	transcription start site region 21078			218 bp downstream
Tssr21079	transcription start site region 21079			212 bp downstream
Tssr21080	transcription start site region 21080			60 bp downstream
Tssr21081	transcription start site region 21081			58 bp upstream
Tssr21082	transcription start site region 21082			84 bp upstream
Tssr21083	transcription start site region 21083			100 bp upstream
Tssr21084	transcription start site region 21084			131 bp upstream
Tssr21085	transcription start site region 21085			248 bp upstream