rs248002984 SNP Detail

Summary

• ID
  rs248002984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCCTGGG GGCCGTGGGG
  GGTGGGGCTT ACCTTCCGGC TTGCCGGGGG CCGGACTAAA CGGGGGCGGA GCCCGCGGTG
  ATTGGGCGCG GGGGCGGGGG CTCAACTACC GCAGAGTCTC AAGAGCAGGC TGCTTTCACT
  TCGCTCCCCG CAGGCACTGG GTCACCAGCT GGTTGGAGCT CTGCGGTCCT TGCCATCGTC
  R
  CCGTCACCGG ATTCCTGCAG CCGCTCTGCG AGCTGTGTTC CACTTGGATT CACACCACCT
  CCGCTGCTCC CGCCGCCACC GCCTCGGCGC CCTTCCCCTG GCCCTCGTCC ACCCAATGTC
  TGACTCTGAT TCTCGGACTG AGAAACGCAA GGTAAACACT CCGCGACTCC CGGGGCGCAG
  GCTGGGGATG GATAGAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355609318	MGP_WTSI_2_127951837	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248002984					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355609318	MGP_WTSI_2_127951837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			116 bp upstream
Gm75592	predicted gene, 75592			within coordinates
Gm75596	predicted gene, 75596			1784 bp downstream
Rr397296	regulatory region 397296			1232 bp upstream
Rr564648	regulatory region 564648			1554 bp distal
Rr564651	regulatory region 564651			41 bp distal
Rr564652	regulatory region 564652			52 bp proximal
Rr564653	regulatory region 564653			127 bp proximal
Rr564654	regulatory region 564654			1912 bp proximal
Rr564655	regulatory region 564655			1921 bp proximal
Tssr20042	transcription start site region 20042			45 bp downstream
Tssr20043	transcription start site region 20043			1457 bp upstream
Tssr20044	transcription start site region 20044			1486 bp upstream
Tssr26150	transcription start site region 26150			1299 bp downstream
Tssr26151	transcription start site region 26151			1923 bp downstream