rs247971942 SNP Detail

Summary

• ID
  rs247971942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101141726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATTAGT TGATGGCTTG
  CTTGTGCTTT CCGCTGTTTT GAAGTAAGGT ACTAGCTTTG TTTCCCATGA ACCCATGGGC
  TCCCCCAAAA AGTAGATGTT TTCTCAACTC CATATCAGAT GCTTTCACAT AAATATCCCA
  AACCACCCAT GTCAGAAGGG TTTCCACCAT GGACACCGCC AATCTTGACA CTGAGGTTTC
  Y
  CACACCATCC CTTCTCAGGC AGGCTAGTAA ACATCTGTTA GCATGCTACT GATTTTACAG
  TGGAAGATCC AAAACATAAC AGTTTGGTCA TGTAAATGAC GAGTCAAGAA AAAGTGTACA
  CAGACAGTAA AGCAAGGTTT AGCACATCTT TGCCTTAATC CTTCCTGCCA CTGTGGGAGC
  GTGGTCCCTG CCTGGTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229206	CHEV_4_100957134	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247971942					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101141726 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	within coordinates
Gm69021	predicted gene, 69021	400 bp upstream
Rr376921	regulatory region 376921	within coordinates
Rr596107	regulatory region 596107	411 bp distal
Rr596108	regulatory region 596108	307 bp distal